Post-doc Student Working at Archbold: Searching for Hidden Drivers of Florida’s Rarest Plants

By Maya Bell, University of Miami

There is a new collaboration growing at Archbold Biological Station, but it is so small, you can’t even see it. Over the last month, post-doctoral researcher Daniel Revillini from the University of Miami has been planting thousands of seeds—some smaller than a speck of dust, others the size of a grain of rice—into hundreds of tiny pots in a makeshift grow house in the basement of the university’s Cox Science Building. The goal is to find out if soil microorganisms, too small to see, affect the fates of these seeds.

The task is tedious and painstaking, but has the tantalizing goal of unlocking the secrets of the hidden microbes that could help some of the rarest plants on Earth. These plants are found only on central Florida’s imperiled Lake Wales Ridge, which stretches from Clermont to Venus.

“It’s a lot of logistics and a lot of finicky work, but once you get it done, all you do is water them, and hopefully watch them grow,” Revillini said, as he spilled seeds from tiny envelopes and, with a pair of tweezers, carefully dropped them on top of an array of soils in hundreds of yellow “conetainers.”

Each of the 1-inch by 1-inch cone-shaped pots contains anywhere from three to 30 seeds collected from a dozen of the small, ground-level herbaceous plants that sprout in the sandy, open areas near Florida rosemary, the dominant species in the ever-shrinking Florida scrub habitat. A fragrant shrub unrelated to the popular culinary herb, rosemary scrub has its own natural “Keep Out” sign. Known as an allelopathic plant, it produces chemicals that inhibit the growth of other plants.

Yet, about 80 different species of the herbaceous plants, many of them endangered or found nowhere else, still manage to grow in the gaps amid the rosemary, prompting University of Miami assistant professors of biology Michelle Afkhami and Christopher Searcy to investigate whether fungi, bacteria, and other microorganisms in the soil of rosemary scrub are the “hidden drivers” that explain why.

In research to be published in a forthcoming peer-reviewed journal, Afkhami, Searcy, and another post-doctoral researcher, Aaron David (also a former Archbold intern), already showed that one plant, Hypericum cumulicola, an endangered St. John’s wort, is dependent on microbes for its persistence. Now, with a grant from the National Science Foundation, and Revillini’s help, they are trying to determine if that’s the case for another dozen of the 80 rare plants.

“Usually when we model distributions of any species, whether plants or animals, we just look at factors in the environment, like climate,” Searcy said. “But there is more and more evidence that microbes play a bigger role in plant health than we knew previously.”

Added Afkhami, “There are microbes everywhere. They live everywhere and are on everything, and we know they are important for plant growth and nutrient cycling. So we’re trying to understand how they impact the distribution of the plants they interact with, which can be important to restore a given habitat, but also to understand how plant species will respond to climate change.”

So, to determine whether soil microbes interact with fire and allelopathy to contribute to individual plant survival and growth, UM’s researchers collected soil from 36 different rosemary scrub patches spread across Archbold and, this past May, subjected all of the soil samples to a prescribed burn.

It is in those soil samples, each of which has its unique well-documented fire history, that Revillini planted the seeds in the Cox basement’s makeshift grow chamber. But complicating his task, seeds from each of the dozen plants were planted in soils that had undergone a number of different treatments. For example, half the collected soil had been sterilized to remove microbes.

Hence, he spent weeks organizing, labeling, and planting more than 1,600 “conetainers.”

“The bottom line,” said Revillini “is each plant species has 144 treatment combinations, so it’s unbelievably tedious to set up.”

Ultimately, though, his painstaking work should help researchers untangle the differences in the role microbes play from the role that soil properties play in governing the health, and perhaps the future, of the rare and endangered plants found in the Lake Wales Ridge.

“Given our dependence on plants for food, shelter, clear air and fuel, it is important to understand how microbes affect plant health, especially as the environment changes,” Afkhami said. “And especially when we have such an important living laboratory almost in our back yard.”


Daniel Revillini carefully sowing seeds into “conetainers” for his experiment.
Photo by: Evan Garcia from the University of Miami


Intern Megan Verner-Crist sets a strip of Florida scrub ablaze as part of a prescribed fire.
Photo by: Daniel Revillini



Leave a Reply

Fill in your details below or click an icon to log in: Logo

You are commenting using your account. Log Out /  Change )

Twitter picture

You are commenting using your Twitter account. Log Out /  Change )

Facebook photo

You are commenting using your Facebook account. Log Out /  Change )

Connecting to %s